Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015793538.1_cds_XP_016434295.1_2954
CDS Infomation

[gene=LOC107760708] [db_xref=GeneID:107760708] [protein=pentatricopeptide repeat-containing protein At5g43790-like] [protein_id=XP_016434295.1] [location=complement(join(4233..6053,6122..6172,6573..6721,10456..10555))] [gbkey=CDS]
Sequence

ATGGTGCTCACCGTAGGCGGAGGAGCATCATCAGCTTTACCTTCGTTCTTTGAAGAACTA
GGGTTTCTGGAAAAAGAGGTCATTTTTTATCAGAAGGAAGTTGAGCTTCGCGATCGCGGG
AGCACAGACGCGATCGCGATGAGTATTTTGTCACTTGGGTTTGTTGTTTATCTGAGTTTG
CGAGGTAGACATTGCGTTCGCGGACAAGGAAATCTGGGTGGGAGAGACTTGTACGGCGCG
TTTGCGAATATGTGGATCAGAATTGTTGTTGAGTTCAGCCGTGCGGTTAATCCTGTGCAA
CTTCGAGCACATCACATGAAAACATTGAGCCCAAAATCTGCCCACCCAATTTTCAAACTC
ATACAACAATGCATAAACATAGCCACCCTCAAGCAAGTGCATGCTCAAATGATCACAACT
GGGCTTATTCTCCACACTTACCCTCTCAGTCGCATACTCATTTCGTCCTCCACCCTAGCC
GCCACCAACTCCTATGCGCTAAGCATTTTCAACCAAGTAAGCAATCCAACTATTTTCCTT
TTCAACACCCTCATCTCATCATCCCTTGCTAGGAAAGATGATCAAGTTCACTTTTCCTTA
GCTCTTTACTCTCGTATTCTCATTCAAACCACTCTCAAGCCCAATAATTACACCTACCCG
TCTCTTTTTAAGGCTTGTAGTTCTCAACCATGGCTTCAACATGGCCGTGCCTTGCACACC
CATGTCTTGAAATTCCTCGAACCACCTTATGATCGTTTTGTTCAAGCCTCGCTGCTTAAT
TTCTACTCCAGGAGTGGTGAATTGGGGGTTTCAAGATTCCTCTTTGATCAAATCACAAGA
CCGGATTTAGCTTCTTGGAACTCCATACTTACAGCTTATGCCCATAATACTTCTGTTCAA
TATGAAGGCAGTTTTAGTAATGCTTATGATAGCACTAATTTGTCATTGGAAGTTTTGATT
TTGTTTAATCAAATGCAGAAATCTTTGACTAGTCCTAATGAGGTTAGTTTGGTGGCGTTA
ATTAGTGCTTGTGCTGATTTGGGTGCGCTTAGTCCGGGGATATGGGCTCATTCTTTTGTG
CTTAGGAATGGCCTCAAGCTCAACCGCTTCGTTGGCACAGCTTTAATCGCCATGTATGCA
AATTGTGGCTGTCTTGATATTGCTCGACAGTTGTTCGATCAATTGCTCGAAAGAGACACA
TATTGTTATAATGCCATGATTAGAGGACTTGCAGTGCACGGCCTTGGGCTGGAGGCTCTT
GACCTTTTCGAGAAAATGGAATTAGAAGGTTTGGTTCCTGATGATGTAACTATGCTAGTT
ATAATATGTGCTTGCTCTCATGTGGGGTTGGTTGATCAAGGCTGCGAATTTTTTGAGTCA
ATGAAGGAGGATTATGGAATTGAGCCTAAGCTTGAGCACTATGGGACCTTAGTGGATCTT
TTGGGTCGAGCAGGCCGGGTGAAGGAGGCTGAGGAAATAGTTCAGACCATTCCTATGAAG
CCAAATGCAGTTCTTTGGAGGTCTTTACTAGGAGCTGCTCGTGTTCATGGTAACTTAGAG
GTAGGTAAATCAGCATTGAAACAGTTGATACAGCTAGAGCCAGAGACTAGCGGGAATTAT
GTGTTGTTATCGAATATGTACGCTAGCTTGAACAGGTGGGATGATGCGAAAAATGTAAGG
AAGTTGATGAAACAACATGGGATCGACAAAGCTCCTGGTAGTAGCATTGTCGATATTGGT
GGTGCTATGCACGAGTTCCTTATTGGCGATAAGACTCATCCACACGCTAAATGGATATAT
CTGAAGCTGGACGAAATGAATAGAAGGCTGCAAGAACACGGTCATAAGTCAGGAACAAGA
GAAGTGTTGTTTGACATTGAAGAGGAAGAGAAGGAAGATGCACTTTCATACCATAGTGAA
AGGTTAGCCATTGCTTATGCTCTTATTGCATCTGATTCTGGTTCCCCTATTAGAATTATA
AAGAACCTAAGGGTTTGCAGTGACTGCCATGCAGCTACTAAGCTTATTTCAAGGATTTAT
GAGAGGGAAATTATAGTAAGAGATAGATCTAGGTTTCATCACTTCAGAAATGAGGCTTGT
TCTTGTATGGATTACTGGTAG

Peptide Sequence

PEP ID

XP_016434295.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like [Nicotiana tabacum]
Sequence

MVLTVGGGASSALPSFFEELGFLEKEVIFYQKEVELRDRGSTDAIAMSILSLGFVVYLSL
RGRHCVRGQGNLGGRDLYGAFANMWIRIVVEFSRAVNPVQLRAHHMKTLSPKSAHPIFKL
IQQCINIATLKQVHAQMITTGLILHTYPLSRILISSSTLAATNSYALSIFNQVSNPTIFL
FNTLISSSLARKDDQVHFSLALYSRILIQTTLKPNNYTYPSLFKACSSQPWLQHGRALHT
HVLKFLEPPYDRFVQASLLNFYSRSGELGVSRFLFDQITRPDLASWNSILTAYAHNTSVQ
YEGSFSNAYDSTNLSLEVLILFNQMQKSLTSPNEVSLVALISACADLGALSPGIWAHSFV
LRNGLKLNRFVGTALIAMYANCGCLDIARQLFDQLLERDTYCYNAMIRGLAVHGLGLEAL
DLFEKMELEGLVPDDVTMLVIICACSHVGLVDQGCEFFESMKEDYGIEPKLEHYGTLVDL
LGRAGRVKEAEEIVQTIPMKPNAVLWRSLLGAARVHGNLEVGKSALKQLIQLEPETSGNY
VLLSNMYASLNRWDDAKNVRKLMKQHGIDKAPGSSIVDIGGAMHEFLIGDKTHPHAKWIY
LKLDEMNRRLQEHGHKSGTREVLFDIEEEEKEDALSYHSERLAIAYALIASDSGSPIRII
KNLRVCSDCHAATKLISRIYEREIIVRDRSRFHHFRNEACSCMDYW

Transcript Sequence

Gene sequence data has not been registered.